17 results · Feed
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Medium 4.4
HTSlib through 1.24 Heap Out-of-Bounds Write via Truncated .gzi Index Count
HTSlib through 1.24 contains a heap out-of-bounds write and read vulnerability in bgzf_index_load_hfile() in bgzf.c that allows attackers to corrupt heap memory by supplying a crafted .gzi index entry count. A count of 0xFFFFFFFF truncates noffs to zero, caus…
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High 7.1
HTSlib CRAM decoder vulnerable to buffer overflow
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_LEN` method, th…
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High 7.1
HTSlib BGZF index file reader has a heap buffer overflow
HTSlib is a library for reading and writing bioinformatics file formats. GZI files are used to index block-compressed GZIP [BGZF] files. In the GZI loading function, `bgzf_index_load_hfile()`, it was possible to trigger an integer overflow, leading to an unde…
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High 7.1
HTSlib CRAM decoder has a heap buffer overflow
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_STOP` method, a…
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High 8.8
HTSlib CRAM decoder vulnerable to buffer overflow
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. For the `VARINT` and `CONST` encodings, incomplete validation o…
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Medium 6.9
HTSlib CRAM reader has out-of-bounds read due to improper validation of input
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the `cram_decode_slice()` function called while reading CRAM records, the value of the mate reference id field wa…
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Medium 6.9
HTSlib CRAM reader has out-of-bounds read due to improper validation of input
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. As one method of removing redundant data, CRAM uses reference-based compression so that instead of storing the full …
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Medium 6.9
HTSlib CRAM reader has out-of-bounds reads due to improper validation of input
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the `cram_decode_slice()` function called while reading CRAM records, validation of the reference id field occurr…
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Medium 6.9
HTSlib CRAM decoder has a NULL Pointer Dereference
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. While most alignment records store DNA sequence and quality val…
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High 8.8
HTSlib CRAM reader has heap buffer overflow due to improper validation of input
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. As one method of removing redundant data, CRAM uses reference-based compression so that instead of storing the full …
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High 8.8
HTSlib CRAM reader has heap buffer overflow due to improper validation of input
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. While most alignment records store DNA sequence and quality values, the format also allows them to omit this data in…
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Unscored —
HTSlib through 1.10.2 allows out-of-bounds write access in vcf_parse_format (called from vcf_parse and vcf_read).
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Unscored —
In HTSlib 1.8, a race condition in cram/cram_io.c might allow local users to overwrite arbitrary files via a symlink at…
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Unscored —
An issue has been found in HTSlib 1.8. It is a memory leak in fai_read in faidx.c. NOTE: This has been disputed with th…
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Unscored —
An issue has been found in HTSlib 1.8. It is a memory leak in bgzf_getline in bgzf.c. NOTE: the software maintainer's p…
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Unscored —
An issue has been found in HTSlib 1.8. It is a buffer over-read in sam_parse1 in sam.c.
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Unscored —
samtools htslib library version 1.4.0 and earlier is vulnerable to buffer overflow in the CRAM rANS codec resulting in …